PLoS One:lncRNA或参与了胃癌的发生

2017-09-29 MedSci MedSci原创

越来越多的证据强调了长链非编码RNAs(lncRNAs)在众多生物过程中的重要作用。然而,在胃癌中lncRNAs的基因组表达谱和其潜在的生物学功能尚未可知。研究人员从TCGA中获得420例胃癌患者的RNA测序数据,确定了胃癌与癌旁正常组织相比的1294个差异表达的lncRNA。此外,研究人员还发现了肠型和弥漫型胃癌247个差异表达的lncRNA。生存分析显示,33个lncRNA与患者总生存率独立相

越来越多的证据强调了长链非编码RNAs(lncRNAs)在众多生物过程中的重要作用。然而,在胃癌中lncRNAs的基因组表达谱和其潜在的生物学功能尚未可知。

研究人员从TCGA中获得420例胃癌患者的RNA测序数据,确定了胃癌与癌旁正常组织相比的1294个差异表达的lncRNA。此外,研究人员还发现了肠型和弥漫型胃癌247个差异表达的lncRNA。生存分析显示,33个lncRNA与患者总生存率独立相关,其中其中6lncRNA进行了验证。位于SCNAs区域的181个差异表达的lncRNA及拷贝数与RNA表达水平之间的关系进行了分析。此外,研究人员通过构建mRNAs 和 lncRNAs的共表达网络推测lncRNA的功能。

总之,该研究表明lncRNA参与了胃癌的发生,并进行了初步分析,为进一步探究lncRNA在胃癌发生中的功能提供研究基础。

原始出处:

Weiwei Han, Zhenyu Zhang, et al. Integrated analysis of long non-coding RNAs in human gastric cancer: An in silico study. PLoS One. 2017; 12(8): e0183517. Published online 2017 Aug 25. doi: 10.1371/journal.pone.0183517.


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    2017-10-06 thlabcde

    好资料学习了!

    0

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    2017-10-01 xzw113
  5. [GetPortalCommentsPageByObjectIdResponse(id=1790040, encodeId=422d1e900405c, content=<a href='/topic/show?id=6e4814388e2' target=_blank style='color:#2F92EE;'>#Plos one#</a>, beContent=null, objectType=article, channel=null, level=null, likeNumber=23, replyNumber=0, topicName=null, topicId=null, topicList=[TopicDto(id=14388, encryptionId=6e4814388e2, topicName=Plos one)], attachment=null, authenticateStatus=null, createdAvatar=, createdBy=fda6311, createdName=119337457, createdTime=Wed Feb 21 17:17:00 CST 2018, time=2018-02-21, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=2005650, encodeId=c8b120056502d, content=<a href='/topic/show?id=6ff1525e13' target=_blank style='color:#2F92EE;'>#CRN#</a>, beContent=null, objectType=article, channel=null, level=null, likeNumber=28, replyNumber=0, topicName=null, topicId=null, topicList=[TopicDto(id=5257, encryptionId=6ff1525e13, topicName=CRN)], attachment=null, authenticateStatus=null, createdAvatar=, createdBy=35fc2500023, createdName=yanjie6253_56072842, createdTime=Wed Mar 07 16:17:00 CST 2018, time=2018-03-07, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=250909, encodeId=6e0f25090926, content=好资料学习了!, beContent=null, objectType=article, channel=null, level=null, likeNumber=64, replyNumber=0, topicName=null, topicId=null, topicList=[], attachment=null, authenticateStatus=null, createdAvatar=, createdBy=92191944782, createdName=thlabcde, createdTime=Fri Oct 06 21:19:25 CST 2017, time=2017-10-06, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=1301871, encodeId=0a1613018e156, content=<a href='/topic/show?id=b469109e41d' target=_blank style='color:#2F92EE;'>#lncRNA#</a>, beContent=null, objectType=article, channel=null, level=null, likeNumber=33, replyNumber=0, topicName=null, topicId=null, topicList=[TopicDto(id=10974, encryptionId=b469109e41d, topicName=lncRNA)], attachment=null, authenticateStatus=null, createdAvatar=, createdBy=2317301, createdName=xzw113, createdTime=Sun Oct 01 08:17:00 CST 2017, time=2017-10-01, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=248901, encodeId=de4f24890147, content=好文.值得点赞!认真学习了.把经验应用于实践.为患者解除病痛., beContent=null, objectType=article, channel=null, level=null, likeNumber=68, replyNumber=0, topicName=null, topicId=null, topicList=[], attachment=null, authenticateStatus=null, createdAvatar=, createdBy=30251637888, createdName=lietome15, createdTime=Fri Sep 29 22:17:43 CST 2017, time=2017-09-29, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=248882, encodeId=30972488822c, content=非常好的文章.学习了, beContent=null, objectType=article, channel=null, level=null, likeNumber=57, replyNumber=0, topicName=null, topicId=null, topicList=[], attachment=null, authenticateStatus=null, createdAvatar=https://wx.qlogo.cn/mmopen/NUyjXTCJjo7LIiaRZTzJ3SEfiauCzTMPW7YvPPYLNJBXG9oh6Al1icq2VQQkIHWxqXehcicTS62YKJVBhxeth3wggw/0, createdBy=7ce01621306, createdName=天涯183, createdTime=Fri Sep 29 21:16:47 CST 2017, time=2017-09-29, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=248872, encodeId=2c622488e2b6, content=这项研究烧钱不少吧, beContent=null, objectType=article, channel=null, level=null, likeNumber=61, replyNumber=0, topicName=null, topicId=null, topicList=[], attachment=null, authenticateStatus=null, createdAvatar=null, createdBy=ba591726358, createdName=欣怡b88dc255, createdTime=Fri Sep 29 20:32:05 CST 2017, time=2017-09-29, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=248848, encodeId=c498248848b4, content=学习了.谢谢, beContent=null, objectType=article, channel=null, level=null, likeNumber=66, replyNumber=0, topicName=null, topicId=null, topicList=[], attachment=null, authenticateStatus=null, createdAvatar=https://wx.qlogo.cn/mmopen/mONcle9pic3zSn0GqHrsfLGSUSR8zwnWWLT4FMl5XH8S58HuZslVkLsAPbXDXaliagK7TOxQfmngKibG1yrDonepCLDkcxGk8hS/0, createdBy=b8282062892, createdName=changjiu, createdTime=Fri Sep 29 19:56:21 CST 2017, time=2017-09-29, status=1, ipAttribution=)]
    2017-09-29 lietome15

    好文.值得点赞!认真学习了.把经验应用于实践.为患者解除病痛.

    0

  6. [GetPortalCommentsPageByObjectIdResponse(id=1790040, encodeId=422d1e900405c, content=<a href='/topic/show?id=6e4814388e2' target=_blank style='color:#2F92EE;'>#Plos one#</a>, beContent=null, objectType=article, channel=null, level=null, likeNumber=23, replyNumber=0, topicName=null, topicId=null, topicList=[TopicDto(id=14388, encryptionId=6e4814388e2, topicName=Plos one)], attachment=null, authenticateStatus=null, createdAvatar=, createdBy=fda6311, createdName=119337457, createdTime=Wed Feb 21 17:17:00 CST 2018, time=2018-02-21, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=2005650, encodeId=c8b120056502d, content=<a href='/topic/show?id=6ff1525e13' target=_blank style='color:#2F92EE;'>#CRN#</a>, beContent=null, objectType=article, channel=null, level=null, likeNumber=28, replyNumber=0, topicName=null, topicId=null, topicList=[TopicDto(id=5257, encryptionId=6ff1525e13, topicName=CRN)], attachment=null, authenticateStatus=null, createdAvatar=, createdBy=35fc2500023, createdName=yanjie6253_56072842, createdTime=Wed Mar 07 16:17:00 CST 2018, time=2018-03-07, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=250909, encodeId=6e0f25090926, content=好资料学习了!, beContent=null, objectType=article, channel=null, level=null, likeNumber=64, replyNumber=0, topicName=null, topicId=null, topicList=[], attachment=null, authenticateStatus=null, createdAvatar=, createdBy=92191944782, createdName=thlabcde, createdTime=Fri Oct 06 21:19:25 CST 2017, time=2017-10-06, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=1301871, encodeId=0a1613018e156, content=<a href='/topic/show?id=b469109e41d' target=_blank style='color:#2F92EE;'>#lncRNA#</a>, beContent=null, objectType=article, channel=null, level=null, likeNumber=33, replyNumber=0, topicName=null, topicId=null, topicList=[TopicDto(id=10974, encryptionId=b469109e41d, topicName=lncRNA)], attachment=null, authenticateStatus=null, createdAvatar=, createdBy=2317301, createdName=xzw113, createdTime=Sun Oct 01 08:17:00 CST 2017, time=2017-10-01, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=248901, encodeId=de4f24890147, content=好文.值得点赞!认真学习了.把经验应用于实践.为患者解除病痛., beContent=null, objectType=article, channel=null, level=null, likeNumber=68, replyNumber=0, topicName=null, topicId=null, topicList=[], attachment=null, authenticateStatus=null, createdAvatar=, createdBy=30251637888, createdName=lietome15, createdTime=Fri Sep 29 22:17:43 CST 2017, time=2017-09-29, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=248882, encodeId=30972488822c, content=非常好的文章.学习了, beContent=null, objectType=article, channel=null, level=null, likeNumber=57, replyNumber=0, topicName=null, topicId=null, topicList=[], attachment=null, authenticateStatus=null, createdAvatar=https://wx.qlogo.cn/mmopen/NUyjXTCJjo7LIiaRZTzJ3SEfiauCzTMPW7YvPPYLNJBXG9oh6Al1icq2VQQkIHWxqXehcicTS62YKJVBhxeth3wggw/0, createdBy=7ce01621306, createdName=天涯183, createdTime=Fri Sep 29 21:16:47 CST 2017, time=2017-09-29, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=248872, encodeId=2c622488e2b6, content=这项研究烧钱不少吧, beContent=null, objectType=article, channel=null, level=null, likeNumber=61, replyNumber=0, topicName=null, topicId=null, topicList=[], attachment=null, authenticateStatus=null, createdAvatar=null, createdBy=ba591726358, createdName=欣怡b88dc255, createdTime=Fri Sep 29 20:32:05 CST 2017, time=2017-09-29, status=1, ipAttribution=), GetPortalCommentsPageByObjectIdResponse(id=248848, encodeId=c498248848b4, content=学习了.谢谢, beContent=null, objectType=article, channel=null, level=null, likeNumber=66, replyNumber=0, topicName=null, topicId=null, topicList=[], attachment=null, authenticateStatus=null, createdAvatar=https://wx.qlogo.cn/mmopen/mONcle9pic3zSn0GqHrsfLGSUSR8zwnWWLT4FMl5XH8S58HuZslVkLsAPbXDXaliagK7TOxQfmngKibG1yrDonepCLDkcxGk8hS/0, createdBy=b8282062892, createdName=changjiu, createdTime=Fri Sep 29 19:56:21 CST 2017, time=2017-09-29, status=1, ipAttribution=)]
    2017-09-29 天涯183

    非常好的文章.学习了

    0

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    2017-09-29 欣怡b88dc255

    这项研究烧钱不少吧

    0

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    2017-09-29 changjiu

    学习了.谢谢

    0

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长链非编码RNA(lncRNA)磷酸酶和张力蛋白同源物假基因1(PTENP1)在胃癌(GC)中明显下调,在GC的进展中起关键作用。然而,PTENP1基因变异与GC风险之间的关联目前尚未清楚。研究人员使用TaqMan技术,在中国人群中选择768例GC患者和768例无癌症对照者,将3种lncRNA PTENP1标记单核苷酸多态性(tagSNPs)(rs7853346 C> G,rs865005

Sci Rep:研究揭示矽肺的发病机制

矽肺是一种慢性、进行性且不可治愈的肺纤维化疾病,目前其发病机制和分子机制尚未完全了解。既往研究表明miRNAs参与了矽肺病的发病机制。本实验既往关于miRNA的芯片研究表明,二氧化硅诱导的肺纤维化小鼠肺组织中miR-503的表达水平下调。本实验中,研究人员验证了暴露于二氧化硅的纤维化小鼠肺组织,人支气管上皮细胞(HBE)和人肺腺癌A549细胞中miR-503的表达水平降低。此外,miR-503过表

Mol Cancer:研究发现食管鳞状细胞癌潜在的诊断及预后的靶点

近期研究发现食管鳞状细胞癌(ESCC)中多个长链非编码RNAs(lncRNAs)异常表达,但其作用机制仍不清楚的大多数。本研究旨在确定ESCC相关的lncRNAs并详细阐明其功能和机制。采用芯片分析在ESCC组织中差异表达的lncRNA,并采用qRT-PCR验证芯片结果。体内外研究中探究表达异常增加最甚的lncRNA——CASC9,对细胞的生长、增殖和细胞周期的作用。使用芯片和恢复测试发现CASC

Nat Commun:非编码RNAs或是胃癌潜在的生物标志物和治疗靶点

既往研究已经发现成千上万的基因在癌症的发生发展中起着重要的作用。由于基因并不会单独发挥作用,但是可以根据它们的相互作用组合成“网络”。在这项研究中,研究人员发现了一个在胃癌细胞中调节Claudin-4的基因网络。研究人员发现,胃癌细胞中Claudin-4上调,且与预后较差相关。Claudin-4可增强AGS、HGC-27及 SGC-7901 细胞的增殖、侵袭及EMT,而这个过程或可由miR-596

Mol Cancer:研究发现卵巢癌新的治疗靶点

越来愈多的研究表明lncRNAs在肿瘤细胞的增殖、分化和凋亡中发挥着重要的作用。研究人员使用实时荧光定量PCR(qRT-PCR)研究了上皮性卵巢癌(EOC)和正常卵巢组织中lncRNA ABHD11-AS1的表达。通过小干扰RNA(siRNA)下调ABHD11-AS1或质粒转染过表达ABHD11-AS1,检测卵巢癌细胞表型及相关分子的表达。结果显示,在卵巢癌组织中的lncRNA ABHD11-AS