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The histone modification reader ZCWPW1 promotes double-strand break repair by regulating cross-talk of histone modifications and chromatin accessibility at meiotic hotspots

期刊: GENOME BIOLOGY, 2022; 23 (1)

Background The PRDM9-dependent histone methylation H3K4me3 and H3K36me3 function in assuring accurate homologous recombination at recombination hotspo......

JIF:11.705

Repeated turnovers keep sex chromosomes young in willows

期刊: GENOME BIOLOGY, 2022; 23 (1)

Background Salicaceae species have diverse sex determination systems and frequent sex chromosome turnovers. However, compared with poplars, the divers......

JIF:11.705

The landscape of hervRNAs transcribed from human endogenous retroviruses across human body sites

期刊: GENOME BIOLOGY, 2022; 23 (1)

Background Human endogenous retroviruses (HERVs), the remnants of ancient retroviruses, account for 8% of the human genome, but most have lost their t......

JIF:11.705

Genomic insights into the evolutionary history and diversification of bulb traits in garlic

期刊: GENOME BIOLOGY, 2022; 23 (1)

Background: Garlic is an entirely sterile crop with important value as a vegetable, condiment, and medicine. However, the evolutionary history of garl......

JIF:11.705

iDNA-ABF: multi-scale deep biological language learning model for the interpretable prediction of DNA methylations

期刊: GENOME BIOLOGY, 2022; 23 (1)

In this study, we propose iDNA-ABF, a multi-scale deep biological language learning model that enables the interpretable prediction of DNA methylation......

JIF:11.705

Pan-cancer surveys indicate cell cycle-related roles of primate-specific genes in tumors and embryonic cerebrum

期刊: GENOME BIOLOGY, 2022; 23 (1)

BackgroundDespite having been extensively studied, it remains largely unclear why humans bear a particularly high risk of cancer. The antagonistic ple......

JIF:11.705

Population-genomic analyses reveal bottlenecks and asymmetric introgression from Persian into iron walnut during domestication

期刊: GENOME BIOLOGY, 2022; 23 (1)

Background Persian walnut, Juglans regia, occurs naturally from Greece to western China, while its closest relative, the iron walnut, Juglans sigillat......

JIF:11.705

m(6)A RNA methylation impairs gene expression variability and reproductive thermotolerance in Arabidopsis

期刊: GENOME BIOLOGY, 2022; 23 (1)

Heat-imposed crop failure is often attributed to reduced thermotolerance of floral tissues; however, the underlying mechanism remains unknown. Here, w......

JIF:11.705

Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information

期刊: GENOME BIOLOGY, 2022; 23 (1)

Background: Cell-cell interactions are important for information exchange between different cells, which are the fundamental basis of many biological ......

JIF:11.705

Diurnal RNAPII-tethered chromatin interactions are associated with rhythmic gene expression in rice

期刊: GENOME BIOLOGY, 2022; 23 (1)

Background The daily cycling of plant physiological processes is speculated to arise from the coordinated rhythms of gene expression. However, the dyn......

JIF:11.705

A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data

期刊: GENOME BIOLOGY, 2022; 23 (1)

Here, we present a multi-modal deep generative model, the single-cell Multi-View Profiler (scMVP), which is designed for handling sequencing data that......

JIF:11.705

VirStrain: a strain identification tool for RNA viruses

期刊: GENOME BIOLOGY, 2022; 23 (1)

Viruses change constantly during replication, leading to high intra-species diversity. Although many changes are neutral or deleterious, some can conf......

JIF:11.705

Combined nature and human selections reshaped peach fruit metabolome

期刊: GENOME BIOLOGY, 2022; 23 (1)

Background Plant metabolites reshaped by nature and human beings are crucial for both their lives and human health. However, which metabolites respond......

JIF:11.705

Development of a highly efficient prime editor 2 system in plants

期刊: GENOME BIOLOGY, 2022; 23 (1)

Low efficiency has seriously restricted the application of prime editing (PE) systems in plants. In this study, we develop an enhanced plant prime edi......

JIF:11.705

Survey of the binding preferences of RNA-binding proteins to RNA editing events

期刊: GENOME BIOLOGY, 2022; 23 (1)

Background: Adenosine-to-inosine (A-to-I) editing is an important RNA posttranscriptional process related to a multitude of cellular and molecular act......

JIF:11.705

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