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Comprehensive analysis of glycosphingolipid glycans by lectin microarrays and MALDI-TOF mass spectrometry

期刊: NATURE PROTOCOLS, 2021; 16 (7)

Glycosphingolipids (GSLs) are ubiquitous glycoconjugates present on the cell membrane; they play significant roles in many bioprocesses such as cell a......

Probing low-copy-number proteins in single living cells using single-cell plasmonic immunosandwich assays

期刊: NATURE PROTOCOLS, 2021; 16 (7)

Cellular heterogeneity is pervasive and of paramount importance in biology. Single-cell analysis techniques are indispensable for understanding the he......

Smart-RRBS for single-cell methylome and transcriptome analysis

期刊: NATURE PROTOCOLS, 2021; 16 (8)

The integration of DNA methylation and transcriptional state within single cells is of broad interest. Several single-cell dual- and multi-omits appro......

Regional and functional division of functional elements of solid-state nanochannels for enhanced sensitivity and specificity of biosensing in complex matrices

期刊: NATURE PROTOCOLS, 2021; 16 (9)

Solid-state nanochannels (SSNs) provide a promising approach for biosensing due to the confinement of molecules inside, their great mechanical strengt......

FLEP-seq: simultaneous detection of RNA polymerase II position, splicing status, polyadenylation site and poly(A) tail length at genome-wide scale by single-molecule nascent RNA sequencing

期刊: NATURE PROTOCOLS, 2021; 16 (9)

Elongation, splicing and polyadenylation are fundamental steps of transcription, and studying their coordination requires simultaneous monitoring of t......

High-throughput cultivation and identification of bacteria from the plant root microbiota

期刊: NATURE PROTOCOLS, 2021; 16 (2)

Cultivating native bacteria from roots of plants grown in a given environment is essential for dissecting the functions of the root microbiota for pla......

Decoding personal biotic and abiotic airborne exposome

期刊: NATURE PROTOCOLS, 2021; 16 (2)

The complexity and dynamics of human diseases are driven by the interactions between internal molecular activities and external environmental exposure......

High-speed laser-scanning biological microscopy using FACED

期刊: NATURE PROTOCOLS, 2021; 16 (9)

Laser scanning is used in advanced biological microscopy to deliver superior imaging contrast, resolution and sensitivity. However, it is challenging ......

Global in situ profiling of RNA-RNA spatial interactions with RIC-seq

期刊: NATURE PROTOCOLS, 2021; 16 (6)

Emerging evidence has demonstrated that RNA-RNA interactions are vital in controlling diverse biological processes, including transcription, RNA splic......

A plate-based single-cell ATAC-seq workflow for fast and robust profiling of chromatin accessibility

期刊: NATURE PROTOCOLS, 2021; 16 (8)

This protocol describes a plate-based ATAC-seq assay that combines up-front bulk tagging of accessible DNA by the Tn5 transposase with FACS sorting fo......

Engineering SARS-CoV-2 using a reverse genetic system

期刊: NATURE PROTOCOLS, ; ()

Reverse genetic systems are a critical tool for studying viruses and identifying countermeasures. In response to the ongoing COVID-19 pandemic, we rec......

Simultaneously measuring the methylation of parent and daughter strands of replicated DNA at the single-molecule level by Hammer-seq

期刊: NATURE PROTOCOLS, ; ()

The stable maintenance of DNA methylation patterns during mitotic cell division is crucial for cell identity. Precisely determining the maintenance ki......

Simultaneous noninvasive recording of electrocardiogram and skin sympathetic nerve activity (neuECG)

期刊: NATURE PROTOCOLS, 2020; 15 (5)

neuECG is the simultaneous noninvasive recording of ECG and skin sympathetic nerve activity and thus can directly record sympathetic nerve activity ov......

Cellular thermal shift assay for the identification of drug-target interactions in the Plasmodium falciparum proteome

期刊: NATURE PROTOCOLS, 2020; 15 (6)

The authors demonstrate two variants of the cellular thermal shift assay (CETSA) protocol-the melt curve and the isothermal dose-response-for use on i......

The HDOCK server for integrated protein-protein docking

期刊: NATURE PROTOCOLS, 2020; 15 (5)

The HDOCK server is developed for template-based and template-free protein-protein docking, using amino acid sequences or PDB structures as inputs. HD......

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