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Identification of gastric cancer subtypes based on pathway clustering

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

Gastric cancer (GC) is highly heterogeneous in the stromal and immune microenvironment, genome instability (GI), and oncogenic signatures. However, a ......

Pan-cancer analysis of SETD2 mutation and its association with the efficacy of immunotherapy

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

Histone methyltransferase SETD2 plays a critical role in maintaining genomic integrity and stability. Here, we investigated the characteristics of SET......

Next-generation sequencing revealed recurrent ZFPM1 mutations in encapsulated papillary carcinoma of the breast

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

Encapsulated papillary carcinoma (EPC) of the breast is a rare subtype of tumor. To date, the genetic abnormalities underlying EPC remain elusive. The......

Knockout of immunotherapy prognostic marker genes eliminates the effect of the anti-PD-1 treatment

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

The efficacy of immunotherapy is largely patient-specific due to heterogeneity in tumors. Combining statistic power from a variety of immunotherapies ......

PARP inhibitors promote stromal fibroblast activation by enhancing CCL5 autocrine signaling in ovarian cancer

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

Cancer-associated fibroblasts (CAFs) play significant roles in drug resistance through different ways. Antitumor therapies, including molecular target......

Genomic characterization and outcome evaluation of kinome fusions in lung cancer revealed novel druggable fusions

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

Kinase fusions represent an important type of somatic alterations that promote oncogenesis and serve as diagnostic markers in lung cancer. We aimed to......

A genomic mutation signature predicts the clinical outcomes of immunotherapy and characterizes immunophenotypes in gastrointestinal cancer

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

The association between genetic variations and immunotherapy benefit has been widely recognized, while such evidence in gastrointestinal cancer remain......

Pentraxin 3 is a stromally-derived biomarker for detection of pancreatic ductal adenocarcinoma

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

Pancreatic ductal adenocarcinoma (PDAC), characterized by dense desmoplastic stroma laid down by pancreatic stellate cells (PSC), has no reliable diag......

Quantitative MRI-based radiomics for noninvasively predicting molecular subtypes and survival in glioma patients

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

Gliomas can be classified into five molecular groups based on the status of IDH mutation, 1p/19q codeletion, and TERT promoter mutation, whereas they ......

The pan-cancer landscape of crosstalk between epithelial-mesenchymal transition and immune evasion relevant to prognosis and immunotherapy response

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

An emerging body of evidence has recently recognized the coexistence of epithelial-mesenchymal transition (EMT) and immune response. However, a system......

Preoperative clinical and tumor genomic features associated with pathologic lymph node metastasis in clinical stage I and II lung adenocarcinoma

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

While next-generation sequencing (NGS) is used to guide therapy in patients with metastatic lung adenocarcinoma (LUAD), use of NGS to determine pathol......

Targeting the epichaperome as an effective precision medicine approach in a novel PML-SYK fusion acute myeloid leukemia

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

The epichaperome is a new cancer target composed of hyperconnected networks of chaperome members that facilitate cell survival. Cancers with an altere......

A multi-omics study links TNS3 and SEPT7 to long-term former smoking NSCLC survival

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

The genetic architecture of non-small cell lung cancer (NSCLC) is relevant to smoking status. However, the genetic contribution of long-term smoking c......

PERK mediates resistance to BRAF inhibition in melanoma with impaired PTEN

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

Targeting mutant BRAF in patients with melanomas harboring this oncogene has been highly successful as a first-line treatment, but other mutations may......

Clinical implications of systemic and local immune responses in human angiosarcoma

期刊: NPJ PRECISION ONCOLOGY, 2021; 5 (1)

Angiosarcomas are a rare subtype of soft-tissue sarcomas which exhibit aggressive clinical phenotypes with limited treatment options and poor outcomes......

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