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Discovery of pan-cancer related genes via integrative network analysis

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (4)

Identification of cancer-related genes is helpful for understanding the pathogenesis of cancer, developing targeted drugs and creating new diagnostic ......

JIF:3.752

Identification of deleterious variants of uncertain significance in BRCA2 BRC4 repeat through molecular dynamics simulations

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (3)

Large quantity of variants of uncertain significance (VUS) has been identified in cancer predisposition genes, but classification of VUS remains a big......

JIF:3.752

PGRNIG: novel parallel gene regulatory network identification algorithm based on GPU

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (6)

Molecular biology has revealed that complex life phenomena can be treated as the result of many gene interactions. Investigating these interactions an......

JIF:3.752

Comparison of scRNA-seq data analysis method combinations

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (6)

Single-cell ribonucleic acid (RNA)-sequencing (scRNA-seq) data analysis refers to the use of appropriate methods to analyze the dataset generated by R......

JIF:3.752

Seven autophagy-related lncRNAs are associated with the tumor immune microenvironment in predicting survival risk of nonsmall cell lung cancer

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (3)

Background Nonsmall cell lung cancer (NSCLC) ranks first among global cancer-related deaths. Despite the emergence of various immunological and target......

JIF:3.752

BioDKG-DDI: predicting drug-drug interactions based on drug knowledge graph fusing biochemical information

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (3)

The way of co-administration of drugs is a sensible strategy for treating complex diseases efficiently. Because of existing massive unknown interactio......

JIF:3.752

Single-cell sequencing: expansion, integration and translation

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (4)

With the rapid advancement in sequencing technologies, the concept of omics has revolutionized our understanding of cellular behaviors. Conventional o......

JIF:3.752

Digital PCR and its applications in noninvasive prenatal testing

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (5)

In the past decade, digital PCR (dPCR), as a new nucleic acid absolute quantification technology, has been widely used in clinical research. dPCR does......

JIF:3.752

Clustering of genes from microarray data using hierarchical projective adaptive resonance theory: a case study of tuberculosis

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (2)

We propose the hierarchical Projective Adaptive Resonance Theory (PART) algorithm for classification of gene expression data. This algorithm is realiz......

JIF:3.752

Integrated multi-cohorts for characterizing the immunogenomic landscape and predicting drug response in triple-negative breast cancer

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (3)

Triple-negative breast cancer (TNBC) is the breast cancer subtype with the highest fatality rate, and it seriously threatens women's health. Recent st......

JIF:3.752

A survey on protein-DNA-binding sites in computational biology

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (5)

Transcription factors are important cellular components of the process of gene expression control. Transcription factor binding sites are locations wh......

JIF:3.752

Integrating multi-omics data to identify dysregulated modules in endometrial cancer

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (4)

Cancer is generally caused by genetic mutations, and differentially expressed genes are closely associated with genetic mutations. Therefore, mutated ......

JIF:3.752

Prognostic and predictive value of a metabolic risk score model in breast cancer: an immunogenomic landscape analysis

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (2)

Breast cancer is a kind of malignant tumor that occurs in breast tissue, which is the most common cancer in women. Cellular metabolism is a critical d......

JIF:3.752

iEnhancer-DLRA: identification of enhancers and their strengths by a self-attention fusion strategy for local and global features

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (5)

Identification and classification of enhancers are highly significant because they play crucial roles in controlling gene transcription. Recently, sev......

JIF:3.752

Genome-wide Mendelian randomization and single-cell RNA sequencing analyses identify the causal effects of COVID-19 on 41 cytokines

期刊: BRIEFINGS IN FUNCTIONAL GENOMICS, 2022; 21 (6)

The elevated levels of inflammatory cytokines have attracted much attention during the treatment of COVID-19 patients. The conclusions of current obse......

JIF:3.752

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