Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Results by year

Table representation of search results timeline featuring number of search results per year.

Year Number of Results
1979 1
1983 1
1984 1
1986 2
1987 2
1988 1
1989 1
1990 2
1991 1
1992 2
1993 2
1994 6
1995 6
1996 2
1997 4
1998 8
1999 3
2000 7
2001 3
2002 8
2003 13
2004 12
2005 13
2006 12
2007 16
2008 15
2009 16
2010 23
2011 23
2012 23
2013 28
2014 26
2015 28
2016 25
2017 29
2018 50
2019 34
2020 51
2021 58
2022 60
2023 61
2024 24

Text availability

Article attribute

Article type

Publication date

Search Results

652 results

Results by year

Filters applied: . Clear all
Page 1
Receiver operating characteristic (ROC) curves: review of methods with applications in diagnostic medicine.
Obuchowski NA, Bullen JA. Obuchowski NA, et al. Phys Med Biol. 2018 Mar 29;63(7):07TR01. doi: 10.1088/1361-6560/aab4b1. Phys Med Biol. 2018. PMID: 29512515 Review.
While sensitivity and specificity are the basic metrics of accuracy, they have many limitations when characterizing test accuracy, particularly when comparing the accuracies of competing tests. In this article we review the basic study design features of ROC studies, illus …
While sensitivity and specificity are the basic metrics of accuracy, they have many limitations when characterizing test accuracy, particula …
Two-Stage Testing for Epistasis: Screening and Verification.
Pecanka J, Jonker MA. Pecanka J, et al. Methods Mol Biol. 2021;2212:69-92. doi: 10.1007/978-1-0716-0947-7_6. Methods Mol Biol. 2021. PMID: 33733351
Firstly, the classical statistical methods for modeling epistasis are computationally very expensive, which makes them impractical on such large scale. Secondly, straightforward corrections for multiple testing using the classical methods tend to be too coarse and ineffici …
Firstly, the classical statistical methods for modeling epistasis are computationally very expensive, which makes them impractical on such l …
Towards testing big data analytics software: the essential role of metamorphic testing.
Zhang Z, Xie X. Zhang Z, et al. Biophys Rev. 2019 Feb;11(1):123-125. doi: 10.1007/s12551-018-0492-6. Epub 2018 Dec 18. Biophys Rev. 2019. PMID: 30565204 Free PMC article. Review.
In the rapidly growing field of big data analysis, scientists from numerous domains such as computer science and biology are constantly challenged by an unprecedented amount of data. While many software programs have been constructed to support processing and analyzing con …
In the rapidly growing field of big data analysis, scientists from numerous domains such as computer science and biology are constantly chal …
How to test bioinformatics software?
Kamali AH, Giannoulatou E, Chen TY, Charleston MA, McEwan AL, Ho JWK. Kamali AH, et al. Biophys Rev. 2015 Sep;7(3):343-352. doi: 10.1007/s12551-015-0177-3. Epub 2015 Aug 13. Biophys Rev. 2015. PMID: 28510230 Free PMC article. Review.
Nonetheless, it is often very difficult to systematically test these programs as it is often hard to verify the correctness of the output, and to effectively generate failure-revealing test cases. Software testing is an important process of verification and v …
Nonetheless, it is often very difficult to systematically test these programs as it is often hard to verify the correctness of the output, a …
Verification of cardiac mechanics software: benchmark problems and solutions for testing active and passive material behaviour.
Land S, Gurev V, Arens S, Augustin CM, Baron L, Blake R, Bradley C, Castro S, Crozier A, Favino M, Fastl TE, Fritz T, Gao H, Gizzi A, Griffith BE, Hurtado DE, Krause R, Luo X, Nash MP, Pezzuto S, Plank G, Rossi S, Ruprecht D, Seemann G, Smith NP, Sundnes J, Rice JJ, Trayanova N, Wang D, Jenny Wang Z, Niederer SA. Land S, et al. Proc Math Phys Eng Sci. 2015 Dec 8;471(2184):20150641. doi: 10.1098/rspa.2015.0641. Proc Math Phys Eng Sci. 2015. PMID: 26807042 Free PMC article.
A large number of independent simulation codes have been developed, but a consistent way of verifying the accuracy and replicability of simulations is lacking. To aid in the verification of current and future cardiac mechanics solvers, this study provides three benchmark p …
A large number of independent simulation codes have been developed, but a consistent way of verifying the accuracy and replicability of simu …
Verification of modified receiver-operating characteristic software using simulated rating data.
Shiraishi J, Fukuoka D, Iha R, Inada H, Tanaka R, Hara T. Shiraishi J, et al. Radiol Phys Technol. 2018 Dec;11(4):406-414. doi: 10.1007/s12194-018-0479-9. Epub 2018 Sep 22. Radiol Phys Technol. 2018. PMID: 30244314
In this study, we verified our modified software and tested the differences between the index of diagnostic accuracies using simulated rating data. ...In conclusion, we believe that our modified software is as capable as the existing software....
In this study, we verified our modified software and tested the differences between the index of diagnostic accuracies using s …
Software-Defined Networking: Categories, Analysis, and Future Directions.
Hussain M, Shah N, Amin R, Alshamrani SS, Alotaibi A, Raza SM. Hussain M, et al. Sensors (Basel). 2022 Jul 25;22(15):5551. doi: 10.3390/s22155551. Sensors (Basel). 2022. PMID: 35898063 Free PMC article.
The paper is organized into seven categories, namely network testing and verification, flow rule installation mechanisms, network security and management issues related to SDN implementation, memory management studies, SDN simulators and emulators, SDN programming l …
The paper is organized into seven categories, namely network testing and verification, flow rule installation mechanisms, netw …
Verification and validation of bioinformatics software without a gold standard: a case study of BWA and Bowtie.
Giannoulatou E, Park SH, Humphreys DT, Ho JW. Giannoulatou E, et al. BMC Bioinformatics. 2014;15 Suppl 16(Suppl 16):S15. doi: 10.1186/1471-2105-15-S16-S15. Epub 2014 Dec 8. BMC Bioinformatics. 2014. PMID: 25521810 Free PMC article.
BACKGROUND: Bioinformatics software quality assurance is essential in genomic medicine. Systematic verification and validation of bioinformatics software is difficult because it is often not possible to obtain a realistic "gold standard" for systematic evalua …
BACKGROUND: Bioinformatics software quality assurance is essential in genomic medicine. Systematic verification and validation …
Verified trustworthy software systems.
Gardner P. Gardner P. Philos Trans A Math Phys Eng Sci. 2017 Oct 13;375(2104):20150408. doi: 10.1098/rsta.2015.0408. Philos Trans A Math Phys Eng Sci. 2017. PMID: 28871055 Free PMC article. No abstract available.
Dictionary-based software for proton dose reconstruction and submilimetric range verification.
Onecha VV, Galve P, Ibáñez P, Freijo C, Arias-Valcayo F, Sanchez-Parcerisa D, España S, Fraile LM, Udías JM. Onecha VV, et al. Phys Med Biol. 2022 Feb 9;67(4). doi: 10.1088/1361-6560/ac4efc. Phys Med Biol. 2022. PMID: 35081519
The MSA algorithm, usinga prioriinformation of the treatment plan, seeks for the linear combination of activities of the precomputed beams that best fits the observed PET data, obtaining at the same time the deposited dose.Main results.the method has been tested using simu …
The MSA algorithm, usinga prioriinformation of the treatment plan, seeks for the linear combination of activities of the precomputed beams t …
652 results