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The construction of a haplotype reference panel using extremely low coverage whole genome sequences and its application in genome-wide association studies and genomic prediction in Duroc pigs

期刊: GENOMICS, 2022; 114 (1)

Extremely low coverage whole genome sequencing (lcWGS) is an economical technique to obtain high-density single nucleotide polymorphisms (SNPs). Here,......

JIF:3.758

Single-cell sequencing reveals the new existence form of dermal papilla cells in the hair follicle regeneration of cashmere goats

期刊: GENOMICS, 2022; 114 (4)

The problem of human hair loss has caused widespread concern, however, such research is difficult because the periodicity is not obvious and the deepe......

JIF:3.758

Transcriptome and DNA methylome provide insights into the molecular regulation of drought stress in sea buckthorn

期刊: GENOMICS, 2022; 114 (3)

Sea buckthorn is a typical drought-resistant tree species. However, there is a general lack of understanding of the pattern of DNA methylation linked ......

JIF:3.758

Systematic investigation of the prognostic impact of clonal status of somatic mutations across multiple cancer types

期刊: GENOMICS, 2022; 114 (4)

Tumors are genetically heterogeneous and many mutations are actually present in subclonal populations. The clonal status of mutations is valuable for ......

JIF:3.758

Secondary metabolite pathway of SDG (secoisolariciresinol) was observed to trigger ROS scavenging system in response to Ca2+ stress in cotton

期刊: GENOMICS, 2022; 114 (4)

Ca2+ is an essential nutrient for plants and animals which plays an important role in plant signal transduction. Although the function and regulation ......

JIF:3.758

Identification and characterization of unique and common lncRNAs and mRNAs in the pituitary, ovary, and uterus of Hu sheep with different prolificacy

期刊: GENOMICS, 2022; 114 (6)

LncRNAs are regarded as regulators in various animal reproductive physiological processes. However, the regulation of lncRNAs in the reproductive orga......

JIF:3.758

SRP54 mediates circadian rhythm-related, temperature-dependent gene expression in Drosophila

期刊: GENOMICS, 2022; 114 (6)

Recent studies have shown that alternative splicing (AS) plays an important role in regulating circadian rhythm. However, it is not clear whether cloc......

JIF:3.758

Comparative physiological and transcriptomic analyses reveal key regulatory networks and potential hub genes controlling peanut chilling tolerance

期刊: GENOMICS, 2022; 114 (2)

The unclear molecular mechanism by which peanuts adapt to chilling stress limits progress in molecular breeding for peanut chilling tolerance. Here, t......

JIF:3.758

Identification of novel biomarkers and key pathways of condyloma acuminata

期刊: GENOMICS, 2022; 114 (2)

Condyloma acuminata (CA) is a prevalent sexually transmitted disease, associated with human papilloma viruses (HPV) infections and host immune status.......

JIF:3.758

Epigenomic profiling indicates a role for DNA methylation in the postnatal liver and pancreas development of giant pandas

期刊: GENOMICS, 2022; 114 (3)

Giant pandas are unique within Carnivora with a strict bamboo diet. Here, the epigenomic profiles of giant panda liver and pancreas tissues collected ......

JIF:3.758

iCancer-Pred: A tool for identifying cancer and its type using DNA methylation

期刊: GENOMICS, 2022; 114 (6)

DNA methylation is an important epigenetics, which occurs in the early stages of tumor formation. And it also is of great significance to find the rel......

JIF:3.758

Two novel RNA-binding proteins identification through computational prediction and experimental validation

期刊: GENOMICS, 2022; 114 (1)

Since RBPs play important roles in the cell, it's particularly important to find new RBPs. We performed iRIP-seq and CLIP-seq to verify two proteins, ......

JIF:3.758

Genome-wide integrated analysis reveals functions of lncRNA-miRNA-mRNA interactions in Atlantic salmon challenged by Aeromonas salmonicida

期刊: GENOMICS, 2022; 114 (1)

Aeromonas salmonicida (A. salmonicida) is a pathogenic bacterium that causes serious problems in the global Atlantic salmon aquaculture industry. In t......

JIF:3.758

Helitron and CACTA DNA transposons actively reshape the common wheat-AK58 genome

期刊: GENOMICS, 2022; 114 (2)

Transposable elements (TEs) play a pivotal role in reshaping the plant genome. Helitrons represent a new class of transposable elements recently disco......

JIF:3.758

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