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MAGE genes encoding for embryonic development in cattle is mainly regulated by zinc finger transcription factor family and slightly by CpG Islands

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background Melanoma Antigen Genes (MAGEs) are a family of genes that have piqued the interest of scientists for their unique expression pattern. The M......

JIF:2.744

Genome wide association study on development and evolution of glutinous rice

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background Glutinous rice as a special endosperm type is consumed as a staple food in East Asian countries by consumers' preference. Genetic studies o......

JIF:2.744

Global abundance of short tandem repeats is non-random in rodents and primates

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background While of predominant abundance across vertebrate genomes and significant biological implications, the relevance of short tandem repeats (ST......

JIF:2.744

Transcriptomic profiling of the telomerase transformed Mesenchymal stromal cells derived adipocytes in response to rosiglitazone

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background Differentiation of Immortalized Human Bone Marrow Mesenchymal Stromal Cells - hTERT (iMSC3) into adipocytes is in vitro model of obesity. I......

JIF:2.744

Identification of hub genes and pathways in colitis-associated colon cancer by integrated bioinformatic analysis

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background Colitis-associated colon cancer (CAC) patients have a younger age of onset, more multiple lesions and invasive tumors than sporadic colon c......

JIF:2.744

Antagonistic regulatory effects of a single cis-acting expression quantitative trait locus between transcription and translation of the MRPL43 gene

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background Heterogeneity of expression quantitative trait locus (eQTL) effects have been shown across gene expression processes. Knowledge on how to p......

JIF:2.744

alpha-Gal antigen-deficient rabbits with GGTA1 gene disruption via CRISPR/Cas9

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background: Previous studies have identified the carbohydrate epitope Gal alpha 1-3Gal beta 1-4GlcNAc-R (termed the alpha-galactosyl epitope), known a......

JIF:2.744

EchinoDB: an update to the web-based application for genomic and transcriptomic data on echinoderms

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background: Here we release a new version of EchinoDB, EchinoDB v2.0 (https://echinodb.uncc.edu). EchinoDB is a database of genomic and transcriptomic......

JIF:2.744

Exploring the underlying molecular mechanism of liver cancer cells under hypoxia based on RNA sequencing

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background The aim of our study was to use the differentially expressed mRNAs (DEmRNAs) and differentially expressed miRNAs (DEmiRNAs) to illustrate t......

JIF:2.744

A detailed workflow to develop QIIME2-formatted reference databases for taxonomic analysis of DNA metabarcoding data

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background The DNA metabarcoding approach has become one of the most used techniques to study the taxa composition of various sample types. To deal wi......

JIF:2.744

Tandem repeats ubiquitously flank and contribute to translation initiation sites

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background While the evolutionary divergence of cis-regulatory sequences impacts translation initiation sites (TISs), the implication of tandem repeat......

JIF:2.744

Morphological and microsatellite DNA diversity of Djallonke sheep in Guinea-Bissau

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background The present study aimed at characterizing the Djallonke Sheep (DS), the only local sheep breed raised in Guinea-Bissau. A total of 200 anim......

JIF:2.744

Screening of primary open-angle glaucoma diagnostic markers based on immune-related genes and immune infiltration

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Purpose Primary open-angle glaucoma (POAG) continues to be a poorly understood disease. Although there were multiple researches on the identification ......

JIF:2.744

Ancestry-related distribution of Runs of homozygosity and functional variants in Qatari population

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Background Describing how genetic history shapes the pattern of medically relevant variants could improve the understanding of how specific loci inter......

JIF:2.744

Draft genome of the aardaker (Lathyrus tuberosus L.), a tuberous legume

期刊: BMC GENOMIC DATA, 2022; 23 (1)

Objectives Lathyrus tuberosus is a nitrogen-fixing member of the Fabaceae which forms protein-rich tubers. To aid future domestication programs for th......

JIF:2.744

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