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Insights into chromosomal evolution and sex determination of Pseudobagrus ussuriensis (Bagridae, Siluriformes) based on a chromosome-level genome

期刊: DNA RESEARCH, 2022; 29 (4)

Pseudobagrus ussuriensis is an aquaculture catfish with significant sexual dimorphism. In this study, a chromosome-level genome with a size of 741.97 ......

JIF:4.232

Incorporation of transition to transversion ratio and nonsense mutations, improves the estimation of the number of synonymous and non-synonymous sites in codons

期刊: DNA RESEARCH, 2022; 29 (4)

A common approach to estimate the strength and direction of selection acting on protein coding sequences is to calculate the dN/dS ratio. The method t......

JIF:4.232

Chromosomal-level genome assembly of the orchid tree Bauhinia variegata (Leguminosae; Cercidoideae) supports the allotetraploid origin hypothesis of Bauhinia

期刊: DNA RESEARCH, 2022; 29 (2)

Cercidoideae, one of the six subfamilies of Leguminosae, contains one genus Cercis with its chromosome number 2n = 14 and all other genera with 2n = 2......

JIF:4.232

The genome of Prunus humilis provides new insights to drought adaption and population diversity

期刊: DNA RESEARCH, 2022; 29 (4)

Prunus humilis (2n = 2x = 16) is a dwarf shrub fruit tree native to China and distributed widely in the cold and arid northern region. In this study, ......

JIF:4.232

Chromosome-scale assembly of barley cv. 'Haruna Nijo' as a resource for barley genetics

期刊: DNA RESEARCH, 2022; 29 (1)

Cultivated barley (Hordeum vulgare ssp. vulgare) is used for food, animal feed, and alcoholic beverages and is widely grown in temperate regions. Both......

JIF:4.232

Chromosome-level genome assembly of a xerophytic plant, Haloxylon ammodendron

期刊: DNA RESEARCH, 2022; 29 (2)

Haloxylon ammodendron is a xerophytic perennial shrub or small tree that has a high ecological value in anti-desertification due to its high tolerance......

JIF:4.232

Chromosome-scale haplotype-phased genome assemblies of the male and female lines of wild asparagus (Asparagus kiusianus), a dioecious plant species

期刊: DNA RESEARCH, 2022; 29 (1)

Asparagus kiusianus is a disease-resistant dioecious plant species and a wild relative of garden asparagus (Asparagus officinalis). To enhance A. kius......

JIF:4.232

Chromosome-level genome assembly of the aquatic plant Nymphoides indica reveals transposable element bursts and NBS-LRR gene family expansion shedding light on its invasiveness

期刊: DNA RESEARCH, 2022; 29 (4)

Nymphoides indica, an aquatic plant, is an invasive species that causes both ecological and economic damage in North America and elsewhere. However, t......

JIF:4.232

Chromosome-scale genome assembly of Glycyrrhiza uralensis revealed metabolic gene cluster centred specialized metabolites biosynthesis

期刊: DNA RESEARCH, 2022; 29 (6)

A high-quality genome assembly is imperative to explore the evolutionary basis of characteristic attributes that define chemotype and provide essentia......

JIF:4.232

BLSSpeller to discover novel regulatory motifs in maize

期刊: DNA RESEARCH, 2022; 29 (4)

With the decreasing cost of sequencing and availability of larger numbers of sequenced genomes, comparative genomics is becoming increasingly attracti......

JIF:4.232

Environmental DNA analysis for macro-organisms: species distribution and more

期刊: DNA RESEARCH, 2022; 29 (3)

In an era of severe biodiversity loss, biological monitoring is becoming increasingly essential. The analysis of environmental DNA (eDNA) has emerged ......

JIF:4.232

Genome assembly of the Pendlebury's roundleaf bat, Hipposideros pendleburyi, revealed the expansion of Tc1/Mariner DNA transposons in Rhinolophoidea

期刊: DNA RESEARCH, 2022; 29 (5)

Bats (Chiroptera) constitute the second largest order of mammals and have several distinctive features, such as true self-powered flight and strong im......

JIF:4.232

De novo genome assembly of the medicinal plant Gentiana macrophylla provides insights into the genomic evolution and biosynthesis of iridoids

期刊: DNA RESEARCH, 2022; 29 (6)

Gentiana macrophylla is a perennial herb in the Gentianaceae family, whose dried roots are used in traditional Chinese medicine. Here, we assembled a ......

JIF:4.232

The genome of the Paleogene relic tree Bretschneidera sinensis: insights into trade-offs in gene family evolution, demographic history, and adaptive SNPs

期刊: DNA RESEARCH, 2022; 29 (1)

Among relic species, genomic information may provide the key to inferring their long-term survival. Therefore, in this study, we investigated the geno......

JIF:4.232

Chromosome-level genome of a leaf vegetable Glebionis coronaria provides insights into the biosynthesis of monoterpenoids contributing to its special aroma

期刊: DNA RESEARCH, 2022; 29 (6)

Glebionis coronaria is a popular vegetable with special aroma and a medical plant in East Asia and Mediterranean, but its biological studies and breed......

JIF:4.232

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