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Exploring the interactions of antihistamine with retinoic acid receptor beta (RARB) by molecular dynamics simulations and genome-wide meta-analysis

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 124 ()

Kaposi sarcoma (KS) is one of the most common AIDS-related malignant neoplasms, which can leave lesions on the skin among HIV patients. These lesions ......

Experimental and theoretical study of the physicochemical properties of the novel imidazole-based eutectic solvent

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 118 ()

Novel solvents and their applications are experiencing an increasing interest by the scientific community. Imidazole has been utilized as a major comp......

Preventing the amyloid-beta peptides accumulation on the cell membrane by applying GHz electric fields: A molecular dynamic simulation

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 123 ()

Alzheimer's disease is associated with accumulating different amyloid peptides on the nerve cell membranes. The non-thermal effects of the GHz electri......

Interactive molecular dynamics in virtual reality for modelling materials and catalysts

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 125 ()

Interactive molecular dynamics simulation in virtual reality (iMD-VR) is emerging as a promising technique in molecular science. Here, we demonstrate ......

In silico design of fusion keratinocyte growth factor containing collagen-binding domain for tissue engineering application

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 118 ()

Keratinocyte growth factor (KGF) is a potential therapeutic factor in wound healing. However, its applications have been restricted due to its low sta......

Cysteine carbonylation with reactive carbonyl species from lipid peroxidation induce local structural changes on thioredoxin active site

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 124 ()

Protein oxidative modifications with reactive carbonyl species (RCS) is directly linked to metabolic processes in premature aging, cancer, neurodegene......

Exploring polyamine interactions and binding pockets in SARS-CoV-2 ORF3a

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 122 ()

Ongoing global pandemic caused by coronavirus (COVID-19) requires urgent development of vaccines, treat-ments, and diagnostic tools. Open reading fram......

Structure-based computational design of novel covalent binders for the treatment of sickle cell disease

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 124 ()

The quest in finding an everlasting panacea to the pernicious impact of sickle cell disease (SCD) in the society hit a turn of success since the recen......

Ensemble-based virtual screening of African natural products to target human thymidylate synthase

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 125 ()

Human thymidylate synthase (hTS) is a validated drug target for chemotherapy. A virtual screening experiment was used to prioritize a list of compound......

Targeting human thymidylate synthase: Ensemble-based virtual screening for drug repositioning and the role of water

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 118 ()

A drug repositioning computational approach was carried to search inhibitors for human thymidylate synthase. An ensemble-based virtual screening of FD......

Q-RepEx: A Python pipeline to increase the sampling of empirical valence bond simulations

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 119 ()

The exploration of chemical systems occurs on complex energy landscapes. Comprehensively sampling rugged energy landscapes with many local minima is a......

Prediction of KRASG12C inhibitors using conjoint fingerprint and machine learning-based QSAR models

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 122 ()

Kirsten rat sarcoma virus G12C (KRAS(G12C)) is the major protein mutation associated with non-small cell lung cancer (NSCLC) severity. Inhibiting KRAS......

Competition of hydrogen, tetrel, and halogen bonds in COCl2-HOX (X=F, Cl, Br, I) complexes

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 122 ()

The present study investigates the competition between hydrogen, halogen, and tetrel bonds from the interaction of COCl2 with HOX using quantum chemis......

Methoxy triphenylamine hexaazatrinaphthylene based small molecules as donor material for photovoltaic applications

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 122 ()

Organic solar cells (OSCs) are capturing huge interest because of their numerous benefits, which include transparency, flexibility, and solution proce......

Designing of anthracene-arylamine hole transporting materials for organic and perovskite solar cells

期刊: JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2023; 122 ()

This study focuses on the creation of 5 small donor molecules (A102W1-A102W5) by substituting the one-sided methoxy group of model (A102R) with differ......

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