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Identification and Analysis of Aux/IAA Family in Acer rubrum

期刊: EVOLUTIONARY BIOINFORMATICS, 2021; 17 ()

The phytohormone auxin are important in all aspects of plant growth and development. The Auxin/Indole-3-Acetic Acid (Aux/IAA) gene responds to auxin i......

Identification of Key Genes and Pathways in Gefitinib-Resistant Lung Adenocarcinoma using Bioinformatics Analysis

期刊: EVOLUTIONARY BIOINFORMATICS, 2021; 17 ()

Gefitinib resistance is a serious threat in the treatment of patients with non-small cell lung cancer (NSCLC). Elucidating the underlying mechanisms a......

The Evolution of G-quadruplex Structure in mRNA Untranslated Region

期刊: EVOLUTIONARY BIOINFORMATICS, 2021; 17 ()

The RNA G-quadruplex (rG4) is a kind of non-canonical high-order secondary structure with important biological functions and is enriched in untranslat......

Genome-Wide Phylogenetic Analysis, Expression Pattern, and Transcriptional Regulatory Network of the Pig C/EBP Gene Family

期刊: EVOLUTIONARY BIOINFORMATICS, 2021; 17 ()

The CCAAT/enhancer binding protein (C/EBP) transcription factors (TFs) regulate many important biological processes, such as energy metabolism, inflam......

Weighted gene co-expression network analysis of hub genes in lung adenocarcinoma

期刊: EVOLUTIONARY BIOINFORMATICS, 2021; 17 ()

Lung adenocarcinoma (LUAD) is a tumor with high incidence. This study aimed to identify the central genes of LUAD. LUAD were analyzed by weighted gene......

An Intron of Invertebrate Microphthalmia Transcription Factor Gene Is Evolved from a Longer Ancestral Sequence

期刊: EVOLUTIONARY BIOINFORMATICS, 2021; 17 ()

Introns are highly variable in number and size. Sequence simulation is an effective method to elucidate intron evolution patterns. Previously, we have......

Full-Length 16S rRNA and ITS Gene Sequencing Revealed Rich Microbial Flora in Roots of Cycas spp. in China

期刊: EVOLUTIONARY BIOINFORMATICS, 2021; 17 ()

Cycads have developed a complex root system categorized either as normal or coralloid roots. Past literatures revealed that a great diversity of key m......

Exploration of Prognostic Biomarkers among Replication Factor C Family in the Hepatocellular Carcinoma

期刊: EVOLUTIONARY BIOINFORMATICS, 2021; 17 ()

Hepatocellular carcinoma (HCC) is one of the common cancers with a high incidence and mortality. The human replication factor C (RFC) family contains ......

Gut Microbiome Changes in Captive Plateau Zokors (Eospalax baileyi)

期刊: EVOLUTIONARY BIOINFORMATICS, 2021; 17 ()

Wild-caught animals must cope with drastic lifestyle and dietary changes after being induced to captivity. How the gut microbiome structure of these a......

Major Revisions in Arthropod Phylogeny Through Improved Supermatrix, With Support for Two Possible Waves of Land Invasion by Chelicerates

期刊: EVOLUTIONARY BIOINFORMATICS, 2020; 16 ()

Deep phylogeny involving arthropod lineages is difficult to recover because the erosion of phylogenetic signals over time leads to unreliable multiple......

Development of Microsatellite Markers for a Dioecious Herpetospermum pedunculosum (Cucurbitaceae)

期刊: EVOLUTIONARY BIOINFORMATICS, 2020; 16 ()

Understanding the evolution of flower diversity is a central topic in plant evolutionary ecology, and natural selection on floral traits via male fitn......

Delineation of the Crucial Evolutionary Amino Acid Sites in Trehalose-6-Phosphate Synthase From Higher Plants

期刊: EVOLUTIONARY BIOINFORMATICS, 2020; 16 ()

Trehalose-6-phosphate synthase (TPS) is a key enzyme in the biosynthesis of trehalose, with its direct product, trehalose-6-phosphate, playing importa......

Genomic Organization and Comparative Phylogenic Analysis of NBS-LRR Resistance Gene Family in Solanum pimpinellifolium and Arabidopsis thaliana

期刊: EVOLUTIONARY BIOINFORMATICS, 2020; 16 ()

NBS-LRR (nucleotide-binding site and leucine-rich repeat) is one of the largest resistance gene families in plants. The completion of the genome seque......

Selection On synonymous Mutations Revealed by 1135 Genomes of Arabidopsis thaliana

期刊: EVOLUTIONARY BIOINFORMATICS, 2020; 16 ()

Synonymous mutations do not change the amino acid but do change the synonymous codon usage. In genomes of different organisms, the gene conversion pro......

PGcloser: Fast Parallel Gap-Closing Tool Using Long-Reads or Contigs to Fill Gaps in Genomes

期刊: EVOLUTIONARY BIOINFORMATICS, 2020; 16 ()

Assembled draft genomes usually contain many gaps because of the length limit of next-generation sequencing. Although many gap-closing tools have been......

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