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Genomic differentiation within East Asian Helicobacter pylori

期刊: MICROBIAL GENOMICS, 2022; 8 (2)

The East Asian region, including China, Japan and Korea, accounts for half of gastric cancer deaths. However, different areas have contrasting gastric......

Identification and characterization of virus- encoded circular RNAs in host cells

期刊: MICROBIAL GENOMICS, 2022; 8 (6)

Emerging evidence has identified viral circular RNAs (circRNAs) in human cells infected by viruses, interfering with the immune system and inducing di......

Prophage-mediated genome differentiation of the Salmonella Derby ST71 population

期刊: MICROBIAL GENOMICS, 2022; 8 (4)

Although Salmonella Derby ST71 strains have been recognized as poultry-specific by previous studies, multiple swine-associated S. Derby ST71 strains w......

The niche- specialist and age- related oral microbial ecosystem: crosstalk with host immune cells in homeostasis

期刊: MICROBIAL GENOMICS, 2022; 8 (6)

Although characterization of the baseline oral microbiota has been discussed, the current literature seems insufficient to draw a definitive conclusio......

GR13-type plasmids in Acinetobacter potentiate the accumulation and horizontal transfer of diverse accessory genes

期刊: MICROBIAL GENOMICS, 2022; 8 (6)

Carbapenem and other antibiotic resistance genes (ARGs) can be found in plasmids in Acinetobacter, but many plasmid types in this genus have not been ......

Genomic analysis reveals high intra-species diversity of Shewanella algae

期刊: MICROBIAL GENOMICS, 2022; 8 (2)

Shewanella algae is widely distributed in marine and freshwater habitats, and has been proved to be an emerging marine zoonotic and human pathogen. Ho......

Characterization of CRISPR-Cas systems in Bifidobacterium breve

期刊: MICROBIAL GENOMICS, 2022; 8 (4)

The clustered regularly interspaced short palindromic repeat (CRISPR)-CRISPR-associated protein (Cas) system is an important adaptive immune system fo......

Population genomics of the food-borne pathogen Vibrio fluvialis reveals lineage associated pathogenicity-related genetic elements

期刊: MICROBIAL GENOMICS, 2022; 8 (2)

Vibrio fluvialis is a food-borne pathogen with epidemic potential that causes cholera-like acute gastroenteritis and sometimes extraintestinal infecti......

Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation

期刊: MICROBIAL GENOMICS, 2022; 8 (3)

The human gut microbiome has been extensively studied, yet the canine gut microbiome is still largely unknown. The availability of high-quality genome......

Comparative genomic analysis of obligately piezophilic Moritella yayanosii DB21MT-5 reveals bacterial adaptation to the Challenger Deep, Mariana Trench

期刊: MICROBIAL GENOMICS, 2021; 7 (7)

Hadal trenches are the deepest but underexplored ecosystems on the Earth. Inhabiting the trench bottom is a group of micro-organisms termed obligate p......

Mining genome traits that determine the different gut colonization potential of Lactobacillus and Bifidobacterium species

期刊: MICROBIAL GENOMICS, 2021; 7 (6)

Although the beneficial effects of probiotics are likely to be associated with their ability to colonize the gut, little is known about the characteri......

Association between metabolic status and gut microbiome in obese populations

期刊: MICROBIAL GENOMICS, 2021; 7 (8)

Despite that obesity is associated with many metabolic diseases, a significant proportion (10-30%) of obese individuals is recognized as 'metabolicall......

Genomic diversity, life strategies and ecology of marine HTVC010P-type pelagiphages

期刊: MICROBIAL GENOMICS, 2021; 7 (7)

SAR11 bacteria dominate ocean surface bacterioplankton communities, and play an important role in marine carbon and nutrient cycling. The biology and ......

Genomic evolution and local epidemiology of Klebsiella pneumoniae from a major hospital in Beijing, China, over a 15 year period: dissemination of known and novel high- risk clones

期刊: MICROBIAL GENOMICS, 2021; 7 (6)

Klebsiella pneumoniae is a frequent cause of nosocomial and severe community- acquired infections. Multidrug- resistant (MDR) and hypervirulent (hv) s......

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