AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suite

Skoufos, G; Almodaresi, F; Zakeri, M; Paulson, JN; Patro, R; Hatzigeorgiou, AG; Vlachos, IS

Skoufos, G; Hatzigeorgiou, AG (通讯作者)，Univ Thessaly, Dept Elect & Comp Engn, Volos 38221, Greece.;Skoufos, G; Hatzigeorgiou, AG (通讯作者)，Hellenic Pasteur Inst, Athens 11521, Greece.;Skoufos, G; Hatzigeorgiou, AG (通讯作者)，Univ Thessaly, Dept Comp Sci & Biomed Informat, DIANA Lab, Lamia 35131, Greece.;Vlachos, IS (通讯作者)，Harvard Med Sch, Beth Israel Deaconess Med Ctr, Canc Res Inst, HMS Initiat RNA Med,Dept Pathol, Boston, MA 02115 USA.;Vlachos, IS (通讯作者)，Beth Israel Deaconess Med Ctr, Spatial Technol U

GENOME BIOLOGY, 2022; 23 (1):

Abstract

We introduce AGAMEMNON (https://github.com/ivlachos/agamemnon) for the acquisition of microbial abundances from shotgun metagenomics and metatranscrip......

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