Context-aware seeds for read mapping

Xin, HY; Shao, MF; Kingsford, C

Kingsford, C (corresponding author), Carnegie Mellon Univ, Computat Biol Dept, Pittsburgh, PA 15213 USA.

ALGORITHMS FOR MOLECULAR BIOLOGY, 2020; 15 (1):

Abstract

Motivation Most modern seed-and-extend NGS read mappers employ a seeding scheme that requires extracting t non-overlapping seeds in each read in order......

Full Text Link