Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing

Lee, ER; Parkin, N; Jennings, C; Brumme, CJ; Enns, E; Casadella, M; Howison, M; Coetzer, M; Avila-Rios, S; Capina, R; Marinier, E; Van Domselaar, G; Noguera-Julian, M; Kirkby, D; Knaggs, J; Harrigan, R; Quinones-Mateu, M; Paredes, R; Kantor, R; Sandstrom, P; Ji, HZ

Ji, HZ (corresponding author), Publ Hlth Agcy Canada, Natl HIV & Retrovirol Labs, Natl Microbiol Lab, JC Wilt Infect Dis Res Ctr, Winnipeg, MB, Canada.; Ji, HZ (corresponding author), Univ Manitoba, Dept Med Microbiol & Infect Dis, Winnipeg, MB, Canada.

SCIENTIFIC REPORTS, 2020; 10 (1):

Abstract

Next generation sequencing (NGS) is a trending new standard for genotypic HIV-1 drug resistance (HIVDR) testing. Many NGS HIVDR data analysis pipeline......

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